UPDATED 04 November 2022
If you deferred VAT payments due between 20 March 2020 and 30 June 2020 and still have payments to make, you can:
You may be charged interest or a penalty if you do not:
If you want to pay your deferred VAT in full by 31 March 2021, send the payment for the full amount to HMRC as usual.
Once you have paid HMRC, you'll need to record the payment in Accounting and match it to your unpaid VAT Returns.
There are different ways to this depending on whether you import bank transactions from a bank feed or your bank statement.
When you show your VAT Returns as paid in Sage Accounting, we create the corresponding payments in the relevant bank account.
Depending on whether you submit VAT Returns monthly or quarterly, you could have up to four unpaid VAT Returns.
For example, we have deferred VAT payments for April, May and June, so we now have 3 unpaid monthly VAT Returns. To make the numbers easier, these are for £60, £40 and £40, making a total of £140.
We've already paid HMRC so we have a £140 payment showing in our real bank account.
First we'll mark the VAT Returns as paid in Sage Accounting.
A bank payment is added to the relevant bank account. In our case this will be three payments of £60, £40 and £40.
If you import bank transactions either from a bank feed or statement import, simply match the single payment to HMRC imported from your bank to the smaller payments you've just recorded. In our case we'll match £140, to the VAT payments of £60, £40 and £40.

If you manually reconcile your bank account, just remember that the payment to HMRC should be reconciled with the smaller VAT payments recorded in Sage Accounting.
The deferred VAT, originally due in March 2021, can now be spread out as 11 smaller repayments with no interest to pay. Once you have registered with HMRC to pay in instalments, you'll need to record these in Sage Accounting and mark your VAT Returns as paid.
In our example, we owe HMRC £140. As we have registered in April, we can split this into 10 payments of £14 each.
First we'll mark the VAT Returns as paid in Sage Accounting.

A bank payment is added to the relevant bank account. In our case this will be separate payments of £14 each.
If you import bank transactions either from a bank feed or statement import, simply match each instalment with the VAT payments you have just recorded.

If you manually reconcile your bank account, just reconcile the payments showing in your bank account with the corresponding payments in Sage Accounting.