Using the Exclude employee option flag triggers the ‘Irregular Employment Payment Pattern Indicator’. When you complete the pay run, HMRC recognises that the employee remains on the payroll but isn’t due any pay for that period. They’ll remain excluded until you untick the box.  CAUTION: Avoid processing them with a zero value. Tax will still be calculated on the year to date values so a refund may show.
▼Processing using Standard pay run - Select Summary from the menu bar.
- Select Process Pay Run.
- Process until the PAY window.
- Select the relevant employee.
- Tick the Exclude Employee box.
▼Processing with Enhanced pay run - Select Summary from the menu bar.
- Select Process Pay Run.
- Select the relevant employee.
- Select Exclude Employee.
- Select Apply and close.
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